Dual RNA-Sequencing of Eucalyptus nitens during Phytophthora cinnamomi Challenge Reveals Pathogen and Host Factors Influencing Compatibility
Identifieur interne : 000244 ( Main/Exploration ); précédent : 000243; suivant : 000245Dual RNA-Sequencing of Eucalyptus nitens during Phytophthora cinnamomi Challenge Reveals Pathogen and Host Factors Influencing Compatibility
Auteurs : Febé E. Meyer [Afrique du Sud] ; Louise S. Shuey [Afrique du Sud] ; Sitha Naidoo [Afrique du Sud] ; Thandekile Mamni [Afrique du Sud] ; Dave K. Berger [Afrique du Sud] ; Alexander A. Myburg [Afrique du Sud] ; Noëlani Van Den Berg [Afrique du Sud] ; Sanushka Naidoo [Afrique du Sud]Source :
- Frontiers in Plant Science [ 1664-462X ] ; 2016.
Abstract
Damage caused by
Url:
DOI: 10.3389/fpls.2016.00191
PubMed: 26973660
PubMed Central: 4773608
Affiliations:
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Dual RNA-Sequencing of <italic>Eucalyptus nitens</italic> during <italic>Phytophthora cinnamomi</italic> Challenge Reveals Pathogen and Host Factors Influencing Compatibility</title><author><name sortKey="Meyer, Febe E" sort="Meyer, Febe E" uniqKey="Meyer F" first="Febé E." last="Meyer">Febé E. Meyer</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Genetics, Forestry and Agricultural Biotechnology Institute, Genomics Research Institute, University of Pretoria</institution><country>Pretoria, South Africa</country></nlm:aff><country xml:lang="fr">Afrique du Sud</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Shuey, Louise S" sort="Shuey, Louise S" uniqKey="Shuey L" first="Louise S." last="Shuey">Louise S. Shuey</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Genetics, Forestry and Agricultural Biotechnology Institute, Genomics Research Institute, University of Pretoria</institution><country>Pretoria, South Africa</country></nlm:aff><country xml:lang="fr">Afrique du Sud</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Naidoo, Sitha" sort="Naidoo, Sitha" uniqKey="Naidoo S" first="Sitha" last="Naidoo">Sitha Naidoo</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Genetics, Forestry and Agricultural Biotechnology Institute, Genomics Research Institute, University of Pretoria</institution><country>Pretoria, South Africa</country></nlm:aff><country xml:lang="fr">Afrique du Sud</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Mamni, Thandekile" sort="Mamni, Thandekile" uniqKey="Mamni T" first="Thandekile" last="Mamni">Thandekile Mamni</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Genetics, Forestry and Agricultural Biotechnology Institute, Genomics Research Institute, University of Pretoria</institution><country>Pretoria, South Africa</country></nlm:aff><country xml:lang="fr">Afrique du Sud</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Berger, Dave K" sort="Berger, Dave K" uniqKey="Berger D" first="Dave K." last="Berger">Dave K. Berger</name><affiliation wicri:level="1"><nlm:aff id="aff2"><institution>Department of Plant Science, Forestry and Agricultural Biotechnology Institute, Genomics Research Institute, University of Pretoria</institution><country>Pretoria, South Africa</country></nlm:aff><country xml:lang="fr">Afrique du Sud</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Myburg, Alexander A" sort="Myburg, Alexander A" uniqKey="Myburg A" first="Alexander A." last="Myburg">Alexander A. Myburg</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Genetics, Forestry and Agricultural Biotechnology Institute, Genomics Research Institute, University of Pretoria</institution><country>Pretoria, South Africa</country></nlm:aff><country xml:lang="fr">Afrique du Sud</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Van Den Berg, Noelani" sort="Van Den Berg, Noelani" uniqKey="Van Den Berg N" first="Noëlani" last="Van Den Berg">Noëlani Van Den Berg</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Genetics, Forestry and Agricultural Biotechnology Institute, Genomics Research Institute, University of Pretoria</institution><country>Pretoria, South Africa</country></nlm:aff><country xml:lang="fr">Afrique du Sud</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Naidoo, Sanushka" sort="Naidoo, Sanushka" uniqKey="Naidoo S" first="Sanushka" last="Naidoo">Sanushka Naidoo</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Genetics, Forestry and Agricultural Biotechnology Institute, Genomics Research Institute, University of Pretoria</institution><country>Pretoria, South Africa</country></nlm:aff><country xml:lang="fr">Afrique du Sud</country><wicri:regionArea></wicri:regionArea></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">26973660</idno><idno type="pmc">4773608</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4773608</idno><idno type="RBID">PMC:4773608</idno><idno type="doi">10.3389/fpls.2016.00191</idno><date when="2016">2016</date><idno type="wicri:Area/Pmc/Corpus">000309</idno><idno type="wicri:Area/Pmc/Curation">000308</idno><idno type="wicri:Area/Pmc/Checkpoint">000199</idno><idno type="wicri:Area/Ncbi/Merge">001F54</idno><idno type="wicri:Area/Ncbi/Curation">001F54</idno><idno type="wicri:Area/Ncbi/Checkpoint">001F54</idno><idno type="wicri:Area/Main/Merge">000244</idno><idno type="wicri:Area/Main/Curation">000244</idno><idno type="wicri:Area/Main/Exploration">000244</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Dual RNA-Sequencing of <italic>Eucalyptus nitens</italic> during <italic>Phytophthora cinnamomi</italic> Challenge Reveals Pathogen and Host Factors Influencing Compatibility</title><author><name sortKey="Meyer, Febe E" sort="Meyer, Febe E" uniqKey="Meyer F" first="Febé E." last="Meyer">Febé E. Meyer</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Genetics, Forestry and Agricultural Biotechnology Institute, Genomics Research Institute, University of Pretoria</institution><country>Pretoria, South Africa</country></nlm:aff><country xml:lang="fr">Afrique du Sud</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Shuey, Louise S" sort="Shuey, Louise S" uniqKey="Shuey L" first="Louise S." last="Shuey">Louise S. Shuey</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Genetics, Forestry and Agricultural Biotechnology Institute, Genomics Research Institute, University of Pretoria</institution><country>Pretoria, South Africa</country></nlm:aff><country xml:lang="fr">Afrique du Sud</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Naidoo, Sitha" sort="Naidoo, Sitha" uniqKey="Naidoo S" first="Sitha" last="Naidoo">Sitha Naidoo</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Genetics, Forestry and Agricultural Biotechnology Institute, Genomics Research Institute, University of Pretoria</institution><country>Pretoria, South Africa</country></nlm:aff><country xml:lang="fr">Afrique du Sud</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Mamni, Thandekile" sort="Mamni, Thandekile" uniqKey="Mamni T" first="Thandekile" last="Mamni">Thandekile Mamni</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Genetics, Forestry and Agricultural Biotechnology Institute, Genomics Research Institute, University of Pretoria</institution><country>Pretoria, South Africa</country></nlm:aff><country xml:lang="fr">Afrique du Sud</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Berger, Dave K" sort="Berger, Dave K" uniqKey="Berger D" first="Dave K." last="Berger">Dave K. Berger</name><affiliation wicri:level="1"><nlm:aff id="aff2"><institution>Department of Plant Science, Forestry and Agricultural Biotechnology Institute, Genomics Research Institute, University of Pretoria</institution><country>Pretoria, South Africa</country></nlm:aff><country xml:lang="fr">Afrique du Sud</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Myburg, Alexander A" sort="Myburg, Alexander A" uniqKey="Myburg A" first="Alexander A." last="Myburg">Alexander A. Myburg</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Genetics, Forestry and Agricultural Biotechnology Institute, Genomics Research Institute, University of Pretoria</institution><country>Pretoria, South Africa</country></nlm:aff><country xml:lang="fr">Afrique du Sud</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Van Den Berg, Noelani" sort="Van Den Berg, Noelani" uniqKey="Van Den Berg N" first="Noëlani" last="Van Den Berg">Noëlani Van Den Berg</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Genetics, Forestry and Agricultural Biotechnology Institute, Genomics Research Institute, University of Pretoria</institution><country>Pretoria, South Africa</country></nlm:aff><country xml:lang="fr">Afrique du Sud</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Naidoo, Sanushka" sort="Naidoo, Sanushka" uniqKey="Naidoo S" first="Sanushka" last="Naidoo">Sanushka Naidoo</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Genetics, Forestry and Agricultural Biotechnology Institute, Genomics Research Institute, University of Pretoria</institution><country>Pretoria, South Africa</country></nlm:aff><country xml:lang="fr">Afrique du Sud</country><wicri:regionArea></wicri:regionArea></affiliation></author></analytic><series><title level="j">Frontiers in Plant Science</title><idno type="eISSN">1664-462X</idno><imprint><date when="2016">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Damage caused by <italic>Phytophthora cinnamomi</italic> Rands remains an important concern on forest tree species. The pathogen causes root and collar rot, stem cankers, and dieback of various economically important <italic>Eucalyptus</italic> spp. In South Africa, susceptible cold tolerant <italic>Eucalyptus</italic> plantations have been affected by various <italic>Phytophthora</italic> spp. with <italic>P. cinnamomi</italic> considered one of the most virulent. The molecular basis of this compatible interaction is poorly understood. In this study, susceptible <italic>Eucalyptus nitens</italic> plants were stem inoculated with <italic>P. cinnamomi</italic> and tissue was harvested five days post inoculation. Dual RNA-sequencing, a technique which allows the concurrent detection of both pathogen and host transcripts during infection, was performed. Approximately 1% of the reads mapped to the draft genome of <italic>P. cinnamomi</italic> while 78% of the reads mapped to the <italic>Eucalyptus grandis</italic> genome. The highest expressed <italic>P. cinnamomi</italic> gene <italic>in planta</italic> was a putative crinkler effector (<italic>CRN1</italic>). Phylogenetic analysis indicated the high similarity of this <italic>P. cinnamomi CRN1</italic> to that of <italic>Phytophthora infestans</italic>. Some CRN effectors are known to target host nuclei to suppress defense. In the host, over 1400 genes were significantly differentially expressed in comparison to mock inoculated trees, including suites of pathogenesis related (<italic>PR</italic>) genes. In particular, a <italic>PR-9</italic> peroxidase gene with a high similarity to a <italic>Carica papaya PR-9</italic> ortholog previously shown to be suppressed upon infection by <italic>Phytophthora palmivora</italic> was down-regulated two-fold. This <italic>PR-9</italic> gene may represent a cross-species effector target during <italic>P. cinnamomi</italic> infection. This study identified pathogenicity factors, potential manipulation targets, and attempted host defense mechanisms activated by <italic>E. nitens</italic> that contributed to the susceptible outcome of the interaction.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Acharya, K" uniqKey="Acharya K">K. Acharya</name></author><author><name sortKey="Pal, A K" uniqKey="Pal A">A. K. Pal</name></author><author><name sortKey="Gulati, A" uniqKey="Gulati A">A. Gulati</name></author><author><name sortKey="Kumar, S" uniqKey="Kumar S">S. Kumar</name></author><author><name sortKey="Singh, A K" uniqKey="Singh A">A. K. Singh</name></author><author><name sortKey="Ahuja, P S" uniqKey="Ahuja P">P. S. Ahuja</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Adhikari, B N" uniqKey="Adhikari B">B. N. Adhikari</name></author><author><name sortKey="Hamilton, J P" uniqKey="Hamilton J">J. P. 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Meyer</name></noRegion><name sortKey="Berger, Dave K" sort="Berger, Dave K" uniqKey="Berger D" first="Dave K." last="Berger">Dave K. Berger</name><name sortKey="Mamni, Thandekile" sort="Mamni, Thandekile" uniqKey="Mamni T" first="Thandekile" last="Mamni">Thandekile Mamni</name><name sortKey="Myburg, Alexander A" sort="Myburg, Alexander A" uniqKey="Myburg A" first="Alexander A." last="Myburg">Alexander A. Myburg</name><name sortKey="Naidoo, Sanushka" sort="Naidoo, Sanushka" uniqKey="Naidoo S" first="Sanushka" last="Naidoo">Sanushka Naidoo</name><name sortKey="Naidoo, Sitha" sort="Naidoo, Sitha" uniqKey="Naidoo S" first="Sitha" last="Naidoo">Sitha Naidoo</name><name sortKey="Shuey, Louise S" sort="Shuey, Louise S" uniqKey="Shuey L" first="Louise S." last="Shuey">Louise S. Shuey</name><name sortKey="Van Den Berg, Noelani" sort="Van Den Berg, Noelani" uniqKey="Van Den Berg N" first="Noëlani" last="Van Den Berg">Noëlani Van Den Berg</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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